奥村晴彦教授のLaTeX2ε美文書作成入門第5版のおかげで、ほとんど論文が仕上がりました、ありがとうございます。Referencesの巾と本文の巾は同じになる様に私は考えているので、プリアンブルから表示させていただくと、
¥documentclass[a4paper,11pt]{jsarticle}
¥usepackage{amsmath}
¥usepackage{otf}
¥usepackage[utf8]{inputenc}
¥usepackage{txfonts}
¥usepackage[T1]{fontenc}
¥usepackage{textcomp}
¥usepackage{setspace}
¥usepackage{bm}
¥usepackage{graphicx}
¥setlength{¥topmargin}{-1in}
¥addtolength{¥topmargin}{28mm}
¥setlength{¥headheight}{5mm}
¥setlength{¥headsep}{3mm}
¥setlength{¥textheight}{71.5¥baselineskip}
¥addtolength{¥textheight}{-38mm}
¥setlength{¥footskip}{5mm}
¥setlength{¥textwidth}{¥fullwidth}
¥setlength{¥evensidemargin}{¥oddsidemargin}
¥renewcommand{¥refname}{¥hspace{0.6pt}¥vspace{-5pt}¥large References}
¥pagestyle{plain}
¥begin{document}となっています、
途中
¥begin{spacing}{1.2}
¥vspace*{-18pt}¥noindent¥vspace*{2pt}mass
途中
¥end{spacing}
¥vspace*{10pt}¥begin{thebibliography}{99}
¥bibitem{KIYOSHI}
K. ¥!AMANO ¥,¥,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi ¥,No ISBN
¥bibitem{PAUL}
P. DAVIES ¥,¥,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
¥bibitem{PAUL1}
P.A.M. DIRAC ¥,¥,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
〜
¥bibitem{GEORGE2}
G. GAMOW, ¥,M. Ycas ¥,¥,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
¥bibitem{YOSHISUKE}
Y. INOUE ¥,¥,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
〜
と計21冊の本が有ります。
LaTeXから生成されたPDFを見ると、
References
[1] K. AMANO The Quantum Mechanics History. ChuoKoronSha
Co.,Ltd. (1973) RyoshiRiki- gakuShi No ISBN
[2] P. DAVIES How to Build a Time Machine. Orion Productions
(2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
[3] P.A.M.DIRAC
THEPRINCIPLESOFQUANTUMMECHANICS,4thedition.OxfordUni
ver sity Press (1958) RyoshiRikigaku, GenshoDai4pan.
IWANAMI SHOTEN
〜
[9] G. GAMOW, M. Ycas MR TOMPKINS IN PAPERBACK. Cambridge
University Press, Lon- don (1965) TomkinsunoBoken.
Hakuyosha 4-8269-1051-7
[10] Y. INOUE Speed Memorization Of Physical Formulae 77.
Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9
Partly
の様になりReferencesのRより[10]の位置が右にずれます、
Rの左側の縦棒と[10]の[ の位置を縦に揃えたいです、
[9]と[10]の位置は9の下に0が来る様にしたいです、
Mac OS 10.8 11月28日21:00までなら間に合いますので、
よろしくお願いいたします。
こちらで試せるように少し手を入れましたが，Rと[が揃っています。
PDFを添付します。
試したもの：
\documentclass[a4paper,11pt]{jsarticle}
\usepackage{amsmath}
\usepackage{otf}
\usepackage[utf8]{inputenc}
\usepackage{txfonts}
\usepackage[T1]{fontenc}
\usepackage{textcomp}
\usepackage{setspace}
\usepackage{bm}
\usepackage{graphicx}
\setlength{\topmargin}{-1in}
\addtolength{\topmargin}{28mm}
\setlength{\headheight}{5mm}
\setlength{\headsep}{3mm}
\setlength{\textheight}{71.5\baselineskip}
\addtolength{\textheight}{-38mm}
\setlength{\footskip}{5mm}
\setlength{\textwidth}{\fullwidth}
\setlength{\evensidemargin}{\oddsidemargin}
\renewcommand{\refname}{\hspace{0.6pt}\vspace{-5pt}\large References}
\pagestyle{plain}
\begin{document}
\begin{thebibliography}{99}
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
〜
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\end{thebibliography}
\end{document}
（編集者は余分な \! や \, を外すと思います。）
PDFを添付します。
試したもの：
\documentclass[a4paper,11pt]{jsarticle}
\usepackage{amsmath}
\usepackage{otf}
\usepackage[utf8]{inputenc}
\usepackage{txfonts}
\usepackage[T1]{fontenc}
\usepackage{textcomp}
\usepackage{setspace}
\usepackage{bm}
\usepackage{graphicx}
\setlength{\topmargin}{-1in}
\addtolength{\topmargin}{28mm}
\setlength{\headheight}{5mm}
\setlength{\headsep}{3mm}
\setlength{\textheight}{71.5\baselineskip}
\addtolength{\textheight}{-38mm}
\setlength{\footskip}{5mm}
\setlength{\textwidth}{\fullwidth}
\setlength{\evensidemargin}{\oddsidemargin}
\renewcommand{\refname}{\hspace{0.6pt}\vspace{-5pt}\large References}
\pagestyle{plain}
\begin{document}
\begin{thebibliography}{99}
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\bibitem{KIYOSHI}
K. \!AMANO \,\,The Quantum Mechanics History. ChuoKoronSha Co.,Ltd. (1973) RyoshiRikigakuShi \,No ISBN
\bibitem{PAUL}
P. DAVIES \,\,How to Build a Time Machine. Orion Productions (2001) TaimuMashinwoTsukuro! Soshisha 4-7942-1223-2
\bibitem{PAUL1}
P.A.M. DIRAC \,\,THE PRINCIPLES OF QUANTUM MECHANICS, 4th edition. Oxford University Press (1958) RyoshiRikigaku, GenshoDai4pan. IWANAMI SHOTEN
〜
\bibitem{GEORGE2}
G. GAMOW, \,M. Ycas \,\,MR TOMPKINS IN PAPERBACK. Cambridge University Press, London (1965) TomkinsunoBoken. Hakuyosha 4-8269-1051-7
\bibitem{YOSHISUKE}
Y. INOUE \,\,Speed Memorization Of Physical Formulae 77. Obunsha (1984) ButsuriKoshikiSupidoAnki 4-01-030709-9 Partly
\end{thebibliography}
\end{document}
（編集者は余分な \! や \, を外すと思います。）
追加
もし、「References の左に 0.6pt の空白は必要」であれば以下の thebibliography を再定義したものを参考にしてください。
\renewcommand{\refname}{\hspace{0.6pt}\vspace{-5pt}\large References}
\makeatletter
\renewenvironment{thebibliography}[1]{%
\global\let\presectionname\relax
\global\let\postsectionname\relax
\section*{\refname}\@mkboth{\refname}{\refname}%
\list{\@biblabel{\@arabic\c@enumiv}}%
{\settowidth\labelwidth{\@biblabel{#1}}%
\advance\labelwidth0.6pt% refname の再定義情報の反映
\leftmargin\labelwidth
\advance\leftmargin\labelsep
\@openbib@code
\usecounter{enumiv}%
\let\p@enumiv\@empty
\renewcommand\theenumiv{\@arabic\c@enumiv}}%
\sloppy
\clubpenalty4000
\@clubpenalty\clubpenalty
\widowpenalty4000%
\sfcode`\.\@m}
{\def\@noitemerr
{\@latex@warning{Empty `thebibliography' environment}}%
\endlist}
\makeatother